| \n", + " | Chromosome | \n", + "Start_Position | \n", + "End_Position | \n", + "Hugo_Symbol | \n", + "Variant_Classification | \n", + "Tumor_Sample_Barcode | \n", + "sample | \n", + "HGVSp_Short | \n", + "
|---|---|---|---|---|---|---|---|---|
| 0 | \n", + "10 | \n", + "101814119 | \n", + "101814119 | \n", + "CPN1 | \n", + "Missense_Mutation | \n", + "TCGA-05-4244-01A-01D-1105-08 | \n", + "TCGA-05-4244-01 | \n", + "p.H366D | \n", + "
| 1 | \n", + "10 | \n", + "129902901 | \n", + "129902901 | \n", + "MKI67 | \n", + "Silent | \n", + "TCGA-05-4244-01A-01D-1105-08 | \n", + "TCGA-05-4244-01 | \n", + "p.N2401N | \n", + "
| 2 | \n", + "10 | \n", + "21104601 | \n", + "21104606 | \n", + "NEBL | \n", + "In_Frame_Del | \n", + "TCGA-05-4244-01A-01D-1105-08 | \n", + "TCGA-05-4244-01 | \n", + "p.S730_V731del | \n", + "
| 3 | \n", + "10 | \n", + "45652518 | \n", + "45652518 | \n", + "RP11-445N18.7 | \n", + "RNA | \n", + "TCGA-05-4244-01A-01D-1105-08 | \n", + "TCGA-05-4244-01 | \n", + ". | \n", + "
| 4 | \n", + "10 | \n", + "50667200 | \n", + "50667200 | \n", + "ERCC6 | \n", + "Silent | \n", + "TCGA-05-4244-01A-01D-1105-08 | \n", + "TCGA-05-4244-01 | \n", + "p.S1381S | \n", + "
| \n", + " | sample | \n", + "mutation | \n", + "
|---|---|---|
| 0 | \n", + "TCGA-05-4244-01 | \n", + "24 | \n", + "
| 1 | \n", + "TCGA-05-4249-01 | \n", + "45 | \n", + "
| 2 | \n", + "TCGA-05-4250-01 | \n", + "40 | \n", + "
| 3 | \n", + "TCGA-05-4382-01 | \n", + "206 | \n", + "
| 4 | \n", + "TCGA-05-4384-01 | \n", + "17 | \n", + "
| \n", + " | sample | \n", + "mutation | \n", + "
|---|---|---|
| 0 | \n", + "TCGA-05-4244-01 | \n", + "163 | \n", + "
| 1 | \n", + "TCGA-05-4249-01 | \n", + "253 | \n", + "
| 2 | \n", + "TCGA-05-4250-01 | \n", + "270 | \n", + "
| 3 | \n", + "TCGA-05-4382-01 | \n", + "1328 | \n", + "
| 4 | \n", + "TCGA-05-4384-01 | \n", + "100 | \n", + "
| \n", + " | SFE_1 | \n", + "SFE_2 | \n", + "nES | \n", + "type | \n", + "FDR | \n", + "
|---|---|---|---|---|---|
| 0 | \n", + "KRAS | \n", + "TP53 | \n", + "-13.912824 | \n", + "ME | \n", + "True | \n", + "
| 1 | \n", + "EGFR | \n", + "KRAS | \n", + "-10.657126 | \n", + "ME | \n", + "True | \n", + "
| 2 | \n", + "STK11 | \n", + "TP53 | \n", + "-7.731611 | \n", + "ME | \n", + "True | \n", + "
| 3 | \n", + "BRAF | \n", + "KRAS | \n", + "-5.536524 | \n", + "ME | \n", + "True | \n", + "
| 4 | \n", + "KRAS | \n", + "STK11 | \n", + "4.877474 | \n", + "CO | \n", + "True | \n", + "
| \n", + " | SFE_1 | \n", + "SFE_2 | \n", + "name | \n", + "support_1 | \n", + "support_2 | \n", + "freq_1 | \n", + "freq_2 | \n", + "overlap | \n", + "w_overlap | \n", + "max_overlap | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|
| 0 | \n", + "KRAS | \n", + "TP53 | \n", + "KRAS - TP53 | \n", + "154.0 | \n", + "221.0 | \n", + "0.306773 | \n", + "0.440239 | \n", + "49.0 | \n", + "35.876017 | \n", + "154.0 | \n", + "
| 1 | \n", + "EGFR | \n", + "KRAS | \n", + "EGFR - KRAS | \n", + "57.0 | \n", + "154.0 | \n", + "0.113546 | \n", + "0.306773 | \n", + "0.0 | \n", + "0.000000 | \n", + "57.0 | \n", + "
| 2 | \n", + "STK11 | \n", + "TP53 | \n", + "STK11 - TP53 | \n", + "59.0 | \n", + "221.0 | \n", + "0.117530 | \n", + "0.440239 | \n", + "13.0 | \n", + "9.545639 | \n", + "59.0 | \n", + "
| 3 | \n", + "BRAF | \n", + "KRAS | \n", + "BRAF - KRAS | \n", + "35.0 | \n", + "154.0 | \n", + "0.069721 | \n", + "0.306773 | \n", + "2.0 | \n", + "0.982143 | \n", + "35.0 | \n", + "
| 4 | \n", + "KRAS | \n", + "STK11 | \n", + "KRAS - STK11 | \n", + "154.0 | \n", + "59.0 | \n", + "0.306773 | \n", + "0.117530 | \n", + "28.0 | \n", + "25.923077 | \n", + "59.0 | \n", + "
| \n", + " | SFE_1 | \n", + "SFE_2 | \n", + "name | \n", + "support_1 | \n", + "support_2 | \n", + "freq_1 | \n", + "freq_2 | \n", + "overlap | \n", + "w_overlap | \n", + "max_overlap | \n", + "... | \n", + "w_r_overlap | \n", + "wES | \n", + "wFDR | \n", + "nES | \n", + "mean_r_nES | \n", + "nFDR | \n", + "cum_freq | \n", + "nFDR2 | \n", + "type | \n", + "FDR | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | \n", + "KRAS | \n", + "TP53 | \n", + "KRAS - TP53 | \n", + "154.0 | \n", + "221.0 | \n", + "0.306773 | \n", + "0.440239 | \n", + "49.0 | \n", + "35.876017 | \n", + "154.0 | \n", + "... | \n", + "58.380021 | \n", + "-15.912734 | \n", + "0.0 | \n", + "-13.928458 | \n", + "-1.984275 | \n", + "0.0 | \n", + "375.0 | \n", + "0.0 | \n", + "ME | \n", + "True | \n", + "
| 1 | \n", + "EGFR | \n", + "KRAS | \n", + "EGFR - KRAS | \n", + "57.0 | \n", + "154.0 | \n", + "0.113546 | \n", + "0.306773 | \n", + "0.0 | \n", + "0.000000 | \n", + "57.0 | \n", + "... | \n", + "16.917421 | \n", + "-11.962423 | \n", + "0.0 | \n", + "-10.720814 | \n", + "-1.241609 | \n", + "0.0 | \n", + "211.0 | \n", + "0.0 | \n", + "ME | \n", + "True | \n", + "
2 rows × 22 columns
\n", + "