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@TampaUseRs @GerkeLab

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tgerke/README.md

AI strategy, cloud research platforms, and engineering standards for clinical trials — grounded in biostatistics and 15+ years of R.

About

🧠 Head of Applied Intelligence at the Prostate Cancer Clinical Trials Consortium

🎓 Trained biostatistician and epidemiologist (ScD, Harvard)

📕 Co-author of Causal Inference in R (CRC Press)

Projects

🚀 Building now 🧰 Open source highlights
ducklake-r — DuckLake’s versioned, audit-trailed data lakehouse for tidyverse workflows ggconsort — CONSORT diagrams in ggplot2
dplyneage — interactive column-level lineage diagrams for dplyr and dbplyr pipelines ggswimlane — clinical trial swimlane plots in ggplot2
LLM-assisted workflows that hold up in regulated clinical trial environments: privacy-preserving agentic coding and CDISC (SDTM/ADaM) automation r-code-review-checklist — a code review checklist template, built for R teams

Pinned Loading

  1. ducklake-r ducklake-r Public

    Tidyverse-friendly R interface to DuckLake, the DuckDB lakehouse format

    R 24 4

  2. GerkeLab/shinyDAG GerkeLab/shinyDAG Public

    a Shiny app to create/visualize/analyze causal diagrams (DAGs)

    R 68 18

  3. ggconsort ggconsort Public

    An R package for creating CONSORT diagrams with ggplot

    R 55 8

  4. ggswimlane ggswimlane Public

    A ggplot interface for creating clincial trial swimlanes

    R 16 1

  5. dplyneage dplyneage Public

    Interactive column-level lineage diagrams for dplyr and dbplyr pipelines

    R 4

  6. edc-core edc-core Public

    Modern open-source EDC for clinical trials: CDISC ODM study builds, audited data capture, Part 11 e-signatures, and self-service SQL/R analytics on versioned snapshots. AGPL-3.0.

    TypeScript